PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032984
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 314aa    MW: 35145.7 Da    PI: 6.8771
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032984genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.78.8e-3059166399
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssaseceae 76 
                  g kdrhsk++T +g+RdRRvRls+++a++++dLq +LG+ ++sk ++WLl++ak  i++l+ +                                   
  Lus10032984  59 GNKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQSRLGLNQPSKVVDWLLNAAKSDIDQLPPLpffpypttttstqysttstfitnhY---------- 146
                  78*************************************************************7666654433322222222222220.......... PP

          TCP  77 sssssasnsssg........kaaksaakskk 99 
                             +        +++ ++ +  +
  Lus10032984 147 -----------PqpphhdfwNSKFEQDQDPS 166
                  ...........22222223211111111122 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-2759160IPR005333Transcription factor, TCP
PROSITE profilePS5136929.26260118IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MHEGVDPSGR YSIRDERQEE EQKNVDIITR KKQVEAGGRT WLRVKDPRIV RVSSSAGSGN  60
KDRHSKVCTI RGLRDRRVRL SVPTAIQLYD LQSRLGLNQP SKVVDWLLNA AKSDIDQLPP  120
LPFFPYPTTT TSTQYSTTST FITNHYPQPP HHDFWNSKFE QDQDPSPFNY QAASFHQHHQ  180
SRPIYDDLQP AGSINNDETG GFHLGASGGA TLRFQPINHH HHTDTNARPP LVTLPSVLMS  240
LSSSQQQQQQ QLGVLGGCNI RMDHDDEEDQ EKEEGGSSSH EQQQFANTNF HTLLRLHSTT  300
SVVAPPSSSS SIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1765119155Putative transcription factor PCF6
5zkt_B4e-1765119155Putative transcription factor PCF6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032984
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100329840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.14e-35plastid transcription factor 1