PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032542
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 555aa    MW: 60089 Da    PI: 5.6258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032542genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-11365407754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++P  +      K++ a+iL  A+eY+k+L
  Lus10032542 365 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAIEYLKEL 407
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-16361429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-14364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8364407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16365421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.21E-13365411No hitNo description
CDDcd048732.76E-6483543No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MISGLQDGNT WMMDDNNNNK NKNKDDAASG GLNNGDKLNH NIILQNMGYK SMLQQEEEEG  60
GEESEWYVPN KEMNFATSNL VADPDGLLLH HTVDHSSSSC SPSASSVFNN LVADPNSQVH  120
YFMQQPKPTS SSSFLNAMNP LDPGFDFGFL DNQLATNYST LLNKPNGGMM FGADNCGGSG  180
HQIGGAAHNF CSPNPQFQSN NNSMLQVLPE TGGGGGEFRG FEEGNANGNN GLLFMNRSNK  240
LLRPLESYPS VGEQPTLFQK RAALRKNLGN NNGKKEMIEM EEFSTEKKRV LLSHGGGGDS  300
FLDDLSIDGS GLNYDSDELG DDTTKFDEIC KAGGFSSSNA NSASTGVTDQ KGGGKKKGLP  360
AKNLMAERRR RKKLNDRLYM LRSVVPRISK MDRASILGDA IEYLKELLQR INDLHNELES  420
TPPGSSSLTP TAGATSFHPL TPTPSALSSH IKDKLCPSPL PSPNGSQPAR VEVRVREGRA  480
VNIHMFCGRR PGLLLSTMTA LDNLGLDIQQ AVISCFNGFA MDIFRAEQCK EGQEVQPEQI  540
KAVLLDSAGY HGLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354372KKKGLPAKNLMAERRRRKK
2366373ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374570.10.0hypothetical protein POPTR_0015s11650g
SwissprotQ9LSE21e-129ICE1_ARATH; Transcription factor ICE1
TrEMBLU5FSQ70.0U5FSQ7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-96bHLH family protein