PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031928
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 530aa    MW: 55360.5 Da    PI: 9.264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031928genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004200222123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  Lus10031928 200 WKCDKCSKRYAVQSDWKAHSKTC 222
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.48E-5187221No hitNo description
Gene3DG3DSA:3.30.160.603.3E-5188221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MATSSSSSVP FFGMSREELD QNLQQQMKQQ SAAGGGGGGG GVIPNHHHHL QSLFHHSSSP  60
FLTNNNSSPS PSSSSLLTGV AQQLHHQHQP PPTHLPAANS SSAATQPPPK KKRNQPGNPS  120
KSGRGSDCFV TKDADGDQQV HMRAKEQQGS SEAQSNKEVV KRKVYLCPEP TCVHHDPSRA  180
LGDLTGIKKH YYRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS  240
FITHRAFCDA LAQESARNPP PPSLSSIGSH LYAGGGAANN MSLGISSSSI THDHTAADIL  300
RLGGGGGGGG GGGGQFDHLL PPTPSLGGGG SSSFRNPHLS SSSSAAAFFM QDSDHGGHHQ  360
SQSNYQQYHH ALLQQFSAAA DPNNTGGSGG NNNHNNNNLF NLGFLPNSST SIDSFNGGGG  420
GEVGGDHHHN QMMGLVGSSS STSTVPSLFN SSIHNHQMSN MVAAHMSATA LLQKAAQMGS  480
TTSSNPNSTT SASLLRSAFG GGGGLSNTTN ITAHNKNKKS SSSSSLCGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33196257364Zinc finger protein JACKDAW
5b3h_F4e-33196257364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031928
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379802.21e-119protein indeterminate-domain 5, chloroplastic
RefseqXP_006379803.21e-119protein indeterminate-domain 5, chloroplastic
RefseqXP_006379804.21e-119protein indeterminate-domain 5, chloroplastic
RefseqXP_024463340.11e-119protein indeterminate-domain 5, chloroplastic
RefseqXP_024463341.11e-119protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2K1ZH361e-118A0A2K1ZH36_POPTR; Uncharacterized protein
STRINGLus100319280.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.22e-75C2H2-like zinc finger protein