PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031838
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 381aa    MW: 43490.6 Da    PI: 6.8899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031838genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-05217236120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  Lus10031838 217 FSCPLCFKTFNRYNNMQMHM 236
                  89*****************9 PP

2zf-C2H214.40.00011301323123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  Lus10031838 301 FMCRKCGKAFAVRGDWRTHEKNC 323
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66217244IPR007087Zinc finger, C2H2
SMARTSM003550.61217239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-5217236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-6283321No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5297321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808301321IPR007087Zinc finger, C2H2
SMARTSM0035549301321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDPFSNYFNN GSFNSNTTTT TNWYYNLPHH TNNYLNHLHS SSSSNTTNYF FSSSNPYNYY  60
KSSSSPPSSP PIREALPLLS LSPTRPHQSS MEVDHHHHHQ EEQEEEDDDD EEETVTVALH  120
LGLPSRHHHH HQIVSSSSVD KVDEGRAVSS TVDDHDVVVD DDDVECLNLN QNDHHQQGHS  180
SNYSSGGVHH QGIINRINRG QYWIPTPAQI LIGPTQFSCP LCFKTFNRYN NMQMHMWGHG  240
SQYRKGPESL RGTQPTAMLR LPCYCCATGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP  300
FMCRKCGKAF AVRGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGN GHAAYGIDSF  360
EEEDDGGSDV EQQQQPMQDH *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278475.11e-149zinc finger protein WIP2-like
SwissprotQ9SVY11e-132ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A498IPH81e-147A0A498IPH8_MALDO; Uncharacterized protein
STRINGLus100318380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]