PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031142
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 329aa    MW: 38398.6 Da    PI: 5.955
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031142genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1813e-5671361129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++  ++ +ee+ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s 
  Lus10031142   7 VPPGFRFHPTDEELVDYYLRKKVNSRRIDL-DVIKDVDLYKIEPWDLQElcRIGSEEQsEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYS- 102
                  69****************************.9***************954555554445**************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  k+el+g++ktLvfy+grap+g+k+dW+mheyrle
  Lus10031142 103 KHELIGMRKTLVFYQGRAPNGQKSDWIMHEYRLE 136
                  999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-615156IPR003441NAC domain
PROSITE profilePS5100560.0717156IPR003441NAC domain
PfamPF023655.6E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MNSFCHVPPG FRFHPTDEEL VDYYLRKKVN SRRIDLDVIK DVDLYKIEPW DLQELCRIGS  60
EEQSEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSKHELIGMR KTLVFYQGRA  120
PNGQKSDWIM HEYRLETDEN AAPQEEGWVV CRVFKKRITT MRKMNDHDVS SCNWYVDDQL  180
SSSSFMHHDN SPDQTTSTTS HPPPPPPSLP LHHHLYNTSS SCKKELADLA AHFPLPRHQD  240
QYFLQLPLLQ SSKPPPHIAP SYNMLDDQMT DWRVLDKFVA SQLSQSDHDE EDEQEDRDQN  300
RIELADDRDT DQELPRLSSG TNQIDTWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-50615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031142
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526377.21e-134NAC domain-containing protein 7
RefseqXP_020239004.11e-134NAC domain-containing protein 7
RefseqXP_028238428.11e-134NAC domain-containing protein 7-like
SwissprotQ9FWX21e-119NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0R0JVR11e-132A0A0R0JVR1_SOYBN; Uncharacterized protein
STRINGLus100311420.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-105NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]