PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029939
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YC
Protein Properties Length: 254aa    MW: 28315.7 Da    PI: 6.418
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029939genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.31.5e-55651681101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Lus10029939  65 QLQSFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 162
                  89******99999************************************************************************************* PP

        NF-YC  96 vprdel 101
                  vpr++l
  Lus10029939 163 VPREDL 168
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.71E-3429159IPR009072Histone-fold
PfamPF008082.5E-2287150IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.6E-3888165IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDHHQQGHGG QPPATGVTSS AAQMSYPYNP NQMQVPQSSG GPATSQHQIA YQQIYNQQQQ  60
QLRQQLQSFW ANQYQEIEKV TDFKNHSLPL ARIKKIMKAD EDVRMISAEA PVVFARACEM  120
FILELTLRAW NHTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREDLKD EVLASIPRGG  180
MAGGGGSSDA MNYWAHQQQQ VGGSPGMIMG KPVMDPSSMY AQQQGMASYM GQPMWPQQQG  240
SDQQHPQSSS EHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B2e-4175165597NF-YC
4awl_C1e-4180165994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B1e-4180165994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C2e-416316516119HapE
4g92_C2e-416316516119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030885.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030883.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030884.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030880.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030890.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030888.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030886.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030889.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030887.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030881.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
RefseqXP_007030882.11e-106Nuclear transcription factor Y subunit C-9 isoform 1
SwissprotQ8L4B21e-81NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A061FA521e-106A0A061FA52_THECC; Nuclear transcription factor Y subunit C-9 isoform 1
STRINGVIT_14s0128g00250.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-79nuclear factor Y, subunit C9