PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 459aa    MW: 50175.2 Da    PI: 9.313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029904genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05102124123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Lus10029904 102 FVCEICSKGFQRDQNLQLHRRGH 124
                  89*******************88 PP

2zf-C2H212.20.00055179201123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +++
  Lus10029904 179 WKCEKCSKKYAVQSDWKAHSKSC 201
                  58*****************9987 PP

3zf-C2H211.30.001209227523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr++++ +H   +
  Lus10029904 209 DCGTVFSRRDSFITHRAFC 227
                  9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-5101124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-7101124No hitNo description
PROSITE profilePS5015710.887102124IPR007087Zinc finger, C2H2
SMARTSM003550.036102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM0035543144174IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-4167199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-7174199No hitNo description
SMARTSM00355140179199IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSNIKGGIFG GDEDDQQQLI LASQQQQEVA THHHLHHHHH LISSIANSTT TTSNSNGSIT  60
TITTTQPAPH LIKKKRNLPG NPDPKAEVIA LSPKTLMAKN RFVCEICSKG FQRDQNLQLH  120
RRGHNLPWKL KQRNKDEVIR KKVYVCPEPD CVHNNPARAL GDLTGIKKHF SRKHGEKRWK  180
CEKCSKKYAV QSDWKAHSKS CGTKEYKCDC GTVFSRRDSF ITHRAFCDAL AEETKASAGI  240
IVNHSTPQSV SNYQITLNTN NKPNPDHQLF NPTPPETTSS KLNHFISLPP PPTTTSTTLS  300
SSLHLSTTPF FASSSASMSA TALLQKAAQM GSTLGSCRPT TPFPSTTTSS PSTNGMQLFM  360
RGGDPYSIDS SQLLFSNQFF HDGLINGNFP GSPGFVNAGG NNNNANSAAA ALWKSFDDGM  420
TTVDFLGVNN GETTSSASRV TRNMDMVLTR FDDEPPLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33175233361Zinc finger protein JACKDAW
5b3h_F2e-33175233361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130141KQRNKDEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036840.11e-121PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ8H1F51e-111IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLB9H5861e-119B9H586_POPTR; C2H2 family protein
STRINGLus100299040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]