PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 268aa    MW: 29838.6 Da    PI: 6.9314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027220genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068211233123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k F +   L  H ++H
  Lus10027220 211 FKCSICDKEFESGQALGGHKKVH 233
                  89**********99999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-5434No hitNo description
SMARTSM003550.22729IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452734IPR007087Zinc finger, C2H2
PfamPF139121.7E-8931IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SuperFamilySSF576672.62E-8138162No hitNo description
PfamPF139121.4E-9140164IPR007087Zinc finger, C2H2
SMARTSM003550.085140162IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702140167IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SuperFamilySSF576672.62E-8206233No hitNo description
PROSITE profilePS5015711.302211238IPR007087Zinc finger, C2H2
PfamPF139121.0E-10211233IPR007087Zinc finger, C2H2
SMARTSM003550.021211233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNNNQPRSCK ICNRWFPTGK SMGGHMRSHL AKLPLPPKPY IPPPPPPQQQ PAGGLLLTSP  60
DPPAPAPSSS PSSTLVNSTE DEDSSFPVMT RTRSVRRKRT LPPPPPPPKQ ITSSGEEEAE  120
VAMCLLMMSF GRGGGGGKLY RCEKCNRGFG SYQALGGHRA SHNKAGRRLV MMDYDDEEEE  180
EEEEEEDDDE YYHHIIDEED GRVGSNSRRM FKCSICDKEF ESGQALGGHK KVHFAEMNKM  240
KKKRRLILSI DLNSPVPDDD DAYRLSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240244KKKRR
2240245KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2308453e-67HQ230845.1 Linum usitatissimum clone 061070_2262_0885 microsatellite sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100272200.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1538968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-16C2H2 family protein