PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026785
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 396aa    MW: 43292.4 Da    PI: 10.506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026785genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068178200123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC  C++ Fs + +L  Hir +
  Lus10026785 178 HKCLSCNMIFSKRTSLLIHIRDC 200
                  79******************966 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280112135IPR007087Zinc finger, C2H2
PROSITE profilePS501578.559112140IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058178207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAPPPPPPLQ HTHRRDGTTI SEIDRHQLII HSHQAIMTVA GGPSRILSPV PSDEPSNSKP  60
KTKLGIIRIK IPPTLTPTPT LTPTPLGVAT DEVSGDGSKS DNIKKATNNG PCVCHECHRG  120
FESRKALGGH IRHRHPKNSN DDNNNTAIVI APPPPPPPLP PRGPTMENLK HDREGTAHKC  180
LSCNMIFSKR TSLLIHIRDC NYQSPPPPPT PSPQEDDNNT NNNNNSIITT KFQAPPPPFL  240
AQFPPPNPNN PSRIVAAAVP NLKDVANNII TSLSSWGKKA KRKFCTNSPQ DRDLKDVAND  300
LVQFSSAPVI FEKDEANLKQ KRRFISLSKK ERIRDWVYQE NLKKKKMMMN LHQLIIPSPI  360
QQHGAVSGPA ALGSSSGAAA AQSKGIIQVW KNHKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026785
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100267850.0(Linum usitatissimum)