PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 354aa    MW: 38158.1 Da    PI: 7.2645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026121genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00022150172123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C++ Fs++  L  H++ H
  Lus10026121 150 FSCNFCKREFSTSQALGGHQNAH 172
                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.25E-6147177No hitNo description
Gene3DG3DSA:3.30.160.609.3E-4148176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.468150177IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEPIAKSESQ SPSNASSVSA TASSEGAIRQ KKVAAELVND LEMKEKVTQL SQSSSSSPAA  60
QPPSGTTSPR VVLDLKLSND RHPNPENKSL QLTLFNGFNN KEEEEEGDSS SHLHPQPHHH  120
HFLHNMNRVV DVEEEEEGRL IESSERSRVF SCNFCKREFS TSQALGGHQN AHKTERAIAK  180
KRQGIEIGGG IGHFPYHPYS TLSPLPFYGS SSFSRSSLSI LGLRADSFIH KPPSSYTWSS  240
PIATASLAYR SRYGAAPWPR AGPLQSHLDR LRLESLGALH NNNSTNNKVE TISLLKNFGL  300
SNNNNNNINC SPNIITIGSG SSQTPLDSPS STSGGGGIVP PAEGSELDLS LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026121
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100261210.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.19e-19C2H2 family protein