PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024883
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 167aa    MW: 19192.6 Da    PI: 5.058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024883genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182374155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f +aeeAa+a+++a+ +++g
  Lus10024883 23 PQYRGIRRRP-WGKFAAEIRDPTRNG--ARRWLGTFESAEEAARAYDRAAFAFRG 74
                 68********.**********98887..************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-122374IPR001471AP2/ERF domain
CDDcd000189.03E-282383No hitNo description
Gene3DG3DSA:3.30.730.102.9E-302484IPR001471AP2/ERF domain
SMARTSM003801.1E-352488IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-232483IPR016177DNA-binding domain
PROSITE profilePS5103224.3952482IPR001471AP2/ERF domain
PRINTSPR003673.9E-102536IPR001471AP2/ERF domain
PRINTSPR003673.9E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGRRRSEQPR NGETEQYEEA PPPQYRGIRR RPWGKFAAEI RDPTRNGARR WLGTFESAEE  60
AARAYDRAAF AFRGNLAILN FPNEYQASNN HHVQYSNHHQ PQYQQPQFQE AAGGYSSGYE  120
MGQQQGSNSS GQGVIEFEYL DDNLLDELLE SYSDVGYDEG YYRQHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-272482260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-272482563ATERF1
3gcc_A8e-272482563ATERF1
5wx9_A2e-2624851475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906346.12e-45ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9GS213e-43B9GS21_POPTR; Uncharacterized protein
STRINGLus100248831e-118(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]