PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024807
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 421aa    MW: 48042.8 Da    PI: 6.3896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024807genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05170193123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y+C+ Cg+ ++++ +Lk+H r  H
  Lus10024807 170 YVCGVCGRKCKTNLDLKKHFRQlH 193
                  9******************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.99170198IPR007087Zinc finger, C2H2
SMARTSM003550.0092170193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172193IPR007087Zinc finger, C2H2
CDDcd061673.07E-10182324No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSPLLTSVDT SHLLKPQILF SQTSLHSSHS FSPANPDRQF KFNGLILQSP RSYLRRRCPI  60
TACYASASAS AAAESEINMV KNKQGTYTAR QNKVVVLWDL DNKPPRGPPY NAALALKEMA  120
ENFGEVIEMS AYANRHAFVH LPQWVVEDRR EKRQQDILER KGIVSSTEPY VCGVCGRKCK  180
TNLDLKKHFR QLHERERQKK VNRMKSQKGK KRQKNKERFI SGNEKYNNEA RRLLTPKVGY  240
GLAAELRRAG VYVKMVEDKP QAADWAVKKQ IEHSMSRGVD WVVLVSDDSD FRGILMRARE  300
SSLGTVVVGD RDRALGKHAD LWVPWIGVEN GDVSEQDLVP KRRTSEDSDS DSDDEFECDS  360
VSHFAEEDVG YYEWSDVGTV VEELTGRRRI SIFSEEEEEE DGDYELWDSD DEDDSFLHHI  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021662197.10.0uncharacterized protein LOC110651241
TrEMBLU5FNF90.0U5FNF9_POPTR; Uncharacterized protein
STRINGLus100248070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-134C2H2-like zinc finger protein