PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023633
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 309aa    MW: 33906.3 Da    PI: 4.8054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023633genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1872122155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr++  +g+WvAeIr+p++     r +lg+f ta+eAa a++ a+++++g
  Lus10023633  72 CKYRGVRQRT-WGKWVAEIREPNK---GPRLWLGTFPTAYEAALAYDDAARAMYG 122
                  79*****999.**********933...49***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-1372122IPR001471AP2/ERF domain
CDDcd000181.58E-3172132No hitNo description
PROSITE profilePS5103221.62873130IPR001471AP2/ERF domain
SMARTSM003806.0E-3673136IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2073131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-3073131IPR001471AP2/ERF domain
PRINTSPR003671.5E-97485IPR001471AP2/ERF domain
PRINTSPR003671.5E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAAFNQASSS DSSRKRRRRR TGSESVAETL KKWKQYNEYL DSENNKSGRR VPAKGSKKGC  60
MKGKGGPENS KCKYRGVRQR TWGKWVAEIR EPNKGPRLWL GTFPTAYEAA LAYDDAARAM  120
YGPGARLNLP AQASSTCDSA TTTTTTRSEV CGNDQIVPGG DGEGESKLAK QESAEEEEND  180
HLVLTGAKLA PQVKGEPLDV KDYEWQNFTG DEVFSVEELL GELENHPLDD AGLLLGDNNN  240
THTQGYLQCS NSDPDPDPRF IGGSQHKEPG PLMSFDHGFE FLEEDKNLVA PVDFSFGLGD  300
LVFEQFDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1674135668ATERF1
3gcc_A2e-1674135668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11317RKRRR
21319RKRRRRR
31320RKRRRRRT
41419KRRRRR
51520RRRRRT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023633
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520794.18e-87dehydration-responsive element-binding protein 2C
SwissprotQ8LFR21e-53DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLB9S4752e-85B9S475_RICCO; Dehydration-responsive element-binding protein 2C, putative
STRINGLus100236330.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.24e-34DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]