PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 282aa    MW: 29936.5 Da    PI: 9.4286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023540genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001289111123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C  C+++F++   L  H  +H
  Lus10023540  89 YECRTCNRTFPSFQALGGHRASH 111
                  99**********99999998887 PP

2zf-C2H216.23e-05162184123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg  F++   L+ H+r+H
  Lus10023540 162 HECGQCGAEFNSGQALRGHMRRH 184
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-888111No hitNo description
PfamPF139122.9E-1288113IPR007087Zinc finger, C2H2
SMARTSM003550.0989111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.42989116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-8157184No hitNo description
Gene3DG3DSA:3.30.160.604.5E-4161184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11161186IPR007087Zinc finger, C2H2
SMARTSM003550.0044162184IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408162189IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAKPLPVLPP PVVLTVLLGG STEEEEDMAN CLILLAQGSS SFVTNNHVNA AISSAVNNNN  60
IASGKFTSRK FMETGSGVEG GGKVGYYVYE CRTCNRTFPS FQALGGHRAS HKKPKNLLVT  120
NNTLLATAPS YNEETNFLQL NSGGGLTASN HKGNNSNYNR VHECGQCGAE FNSGQALRGH  180
MRRHRAPPTT IATNLSLLTS NNGGLSSYKN TAANNNKVGG TSGEERLVLG KRGRSLRTTS  240
LDLDLNQLPA PEEKQPITNL PPANNKPTTV FPSQALVGCH Y*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100235400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-33C2H2 family protein