PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 223aa    MW: 23831.9 Da    PI: 7.7429
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022610genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006580102123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Lus10022610  80 YQCKTCDRCFNSFQALGGHRASH 102
                  9***********99999998887 PP

2zf-C2H213.60.0002146168123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs+   L  H+r+H
  Lus10022610 146 HECSICGAGFSSGQALGGHMRRH 168
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.54E-979102No hitNo description
PfamPF139121.6E-979103IPR007087Zinc finger, C2H2
SMARTSM003550.1180102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.13880107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576673.54E-9141168No hitNo description
Gene3DG3DSA:3.30.160.604.5E-4144168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12145169IPR007087Zinc finger, C2H2
SMARTSM003550.017146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743146168IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MADMVTAIDK VVVKGKRTKR QRPLLLTANS NTNIQVSSTA TTSTTSSTSA ESTCTEEEDM  60
ANCLILLAQG TASPAEAFVY QCKTCDRCFN SFQALGGHRA SHKRLRTEED KGNDGGKVVA  120
AVKSVDRKEE LDLSLGIVNS KQSKVHECSI CGAGFSSGQA LGGHMRRHRT VVEPPLPVRS  180
GLELDLNLPA PEDVDGRELN KFRFVFSSSS AAVASALVDC HF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022610
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027469.11e-52PREDICTED: zinc finger protein ZAT5
SwissprotQ681X42e-42ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A061ET063e-51A0A061ET06_THECC; Nucleic acid binding protein, putative
STRINGLus100226101e-163(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-37C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]