PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022083
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 377aa    MW: 43109.6 Da    PI: 5.8041
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022083genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34491412103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e++ed+ +++++sws+ g+sfvv+d+++f++++Lp++Fkhsnf+SFvRQLn+YgF+k++ e+         weF+ + F +g+k+ll++i+
   Lus10022083  49 FLTKTFEMVEDPIIDDVVSWSRGGTSFVVWDPDSFSNNLLPRFFKHSNFSSFVRQLNTYGFRKIDPER---------WEFAAEGFLRGQKHLLKNIR 136
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
   Lus10022083 137 RRKAT 141
                   **975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5845138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3745138IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-184972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-188799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-18100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MNPFFTVKEE LFDVGYGYQD PRPHLPPTTR TAPPPQPIEG LHDAGPPPFL TKTFEMVEDP  60
IIDDVVSWSR GGTSFVVWDP DSFSNNLLPR FFKHSNFSSF VRQLNTYGFR KIDPERWEFA  120
AEGFLRGQKH LLKNIRRRKA TSPSSLSYPP PPFPSKTYPI PDQAADASAV ELGRFGFDEE  180
INRLKRDKQV LTIELVKLRR QQQSTREFVA ELERRLRETE TKQHQMMQFL ARAVQNPAFL  240
HQLKDKRKEL QEALNNKRRR RRPIGESSKN RLLVKPEPLE YGFGWSDELE ALALEMQGYG  300
KGIRKVAEEE EEEYIEATSD QELDDGFWEE LLSESTGGDE GVGGDQEAVT ALAEQLGYLP  360
IRLKVNGKRG IPSATF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-254414412125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245261KRKELQEALNNKRRRRR
2256261KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520943.11e-138PREDICTED: heat stress transcription factor A-7a
RefseqXP_015575825.11e-138PREDICTED: heat stress transcription factor A-7a
RefseqXP_015575826.11e-138PREDICTED: heat stress transcription factor A-7a
SwissprotQ8H7Y61e-105HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLB9S4N61e-138B9S4N6_RICCO; DNA binding protein, putative
STRINGPOPTR_0005s23640.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-94heat shock transcription factor A6B