PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021999
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 316aa    MW: 34973.9 Da    PI: 9.9848
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021999genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31245302359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p ++++tYeg+Hnh+
  Lus10021999 245 DEYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERCLEEPAMLIVTYEGDHNHS 302
                  9*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-16194241IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.9E-33231302IPR003657WRKY domain
PROSITE profilePS5081129.172238304IPR003657WRKY domain
SuperFamilySSF1182902.62E-26241302IPR003657WRKY domain
SMARTSM007741.0E-36243303IPR003657WRKY domain
PfamPF031063.9E-26245301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEGVEEASKE AVESCYRVLG LICHPIEDQS VQATNLVAET GDTVLKFKRV VSLLSNTGLV  60
GRGRFRKQLN KLFKSSSLPH TIFLDYDDGS ISTTTVTTEI LAPRPLQIVP PPNNTSFVPT  120
RFPDPRMMMF QQQNQQKLKY DHQAEMMMKF DHGGSESTTT RSFMSSLRMG GGGSDSFHLI  180
GIPRSSSYNH QHNRRCSSGS VKCGASAAAA TSSGKCHCSK KRKLRVKRSI KVPAISNKVA  240
DIPPDEYSWR KYGQKPIKGS PYPRGYYKCS SLRGCPARKH VERCLEEPAM LIVTYEGDHN  300
HSRLFTSSSS MSALT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-202413011271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021999
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894273.11e-101probable WRKY transcription factor 74
SwissprotQ93WU64e-99WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A140H8P97e-99A0A140H8P9_MANES; WRKY transcription factor 45
STRINGLus100219990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.15e-94WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]