PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021934
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YC
Protein Properties Length: 238aa    MW: 26932.4 Da    PI: 4.9027
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021934genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.26.7e-55621651101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   i ++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Lus10021934  62 QLQTFWADQfqeITQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 159
                  89*****99888999*********************************************************************************** PP

        NF-YC  96 vprdel 101
                  vpr++l
  Lus10021934 160 VPREDL 165
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.62E-3346156IPR009072Histone-fold
PfamPF008081.4E-2184147IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.6E-3885162IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDQQGQPNEA TGVGSTAPIP YGIVPYQHNQ MMVQSPTQQL AQQHQLAYQH IHQQQQQQLQ  60
QQLQTFWADQ FQEITQTTDF KNHSLPLARI KKIMKADEDV RMISAEAPVI FARACEMFIL  120
ELTLRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV PREDLKEEIL ASVPRGSLPV  180
GGSAEPMPYY YLPPPAAAGM SVGRPVVDQA LYGQPPYMPQ QMWPHQQEEE QPPSADS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-41481624119HapE
4g92_C3e-41481624119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010746.11e-116PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B23e-84NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5G1091e-114U5G109_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03730.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-75nuclear factor Y, subunit C9