PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021873
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 180aa    MW: 20009.2 Da    PI: 8.9887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021873genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-193182256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrdp ++g  +r +lg+f+tae Aa+a+++a  +++g+
  Lus10021873 31 RYRGVRRRP-WGKYAAEIRDPAKQG--ARLWLGTFDTAEAAARAYDKASFSMRGH 82
                 69*******.**********96654..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-363195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-313191IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-223190IPR016177DNA-binding domain
PfamPF008471.2E-133182IPR001471AP2/ERF domain
PROSITE profilePS5103224.5663189IPR001471AP2/ERF domain
CDDcd000182.29E-293190No hitNo description
PRINTSPR003673.1E-113243IPR001471AP2/ERF domain
PRINTSPR003673.1E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEANNNKLAT SSNSVVVDPN HHQDHPEPGL RYRGVRRRPW GKYAAEIRDP AKQGARLWLG  60
TFDTAEAAAR AYDKASFSMR GHLAMLNFPN EYYPQLHEVG PTYFPRPPHP LMMSSNTSNK  120
GGGSTGRGVV GGNTSARGNG GGDKEKQVFE FECLDDSVLE ELLENSSELE RQRRHRRKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-293115814114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021873
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887868.12e-46ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A371E6D22e-47A0A371E6D2_MUCPR; Ethylene-responsive transcription factor ERF098 (Fragment)
STRINGLus100218731e-132(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-38ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]