PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021798
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 475aa    MW: 51751.6 Da    PI: 5.6683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021798genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059121143123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+Cg+ +++ ++   H  ++
  Lus10021798 121 FECPICGQAYRSEEDVSAHVESC 143
                  89*****************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.905.2E-72159No hitNo description
CDDcd092122.93E-20180276No hitNo description
SuperFamilySSF1435038.11E-18193269IPR018997PUB domain
SMARTSM005807.6E-16193257IPR018997PUB domain
PfamPF094091.6E-14194256IPR018997PUB domain
SuperFamilySSF542361.19E-11339449IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.905.2E-7353416No hitNo description
PROSITE profilePS500339.525365449IPR001012UBX domain
PfamPF007896.5E-5366416IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDDMKDKFKG FVKKVSSSSS GKFKGQGRVL GTNSSSSSSS DSYNSVYARF SQPVNPKPTP  60
NPSSHSNSIP SPQKSSAPVH GSSKPASSSA PIPKPSNGFD AFGPLITSSE RSKNGYSLNV  120
FECPICGQAY RSEEDVSAHV ESCVTEGVRV ADVTSNGSDD NNNAVSDGKI DEEVSLLDES  180
CVAAYLSGKP PEGSLEVVLR LFRNIVRDPE NVKFRRVRMG NPKIREAVTD VAGGVELLEL  240
AGFELKEEGG EMWALMEDVP GKERIGLINK VIGFLEPSKV ENMKASIVPV EEDQPAERKK  300
IDRQIKVFFA VSENVAAKIE VPDSFYNLSA IELKREADMR KKKLAESQLL VPKSFREKQA  360
KAARRKYTRT VVRIQFPDGV VLQGVFAPWE PTTALYEFVG LALKDNSLEF DLMHPVIVKR  420
RVIPRSAEAG GGSITLDDED LVPSALIKFK PIETDSSVFT GLCNELLEIS EPLT*
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021798
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021687190.10.0plant UBX domain-containing protein 2-like
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLA0A2P2JET90.0A0A2P2JET9_RHIMU; Uncharacterized protein
STRINGLus100217980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]