PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021713
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 315aa    MW: 35685.6 Da    PI: 8.9671
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021713genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.91.8e-421122453136
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssgkaaksaa.ks 97 
                  gkkdrhski+T++g RdRR+Rls+++a+rfFdLqd+LGfdk+sktieWL++++k ai++l  +  ++ s s c++ s ++ +   ss+k+ ++++ k 
  Lus10021713 112 GKKDRHSKIYTAKGARDRRMRLSLPIARRFFDLQDMLGFDKASKTIEWLFTMSKSAIQDLQIDvcTTCSTSTCSEISTEVVVM--SSAKSTRNEKvKM 207
                  89***********************************************************9997555556674444444444..2234444444244 PP

          TCP  98 kksqksaasalnlakesrakarararertrekmriknkl 136
                  ++  + ++++++++ke r karararert+ek+++k+k+
  Lus10021713 208 ESCIA-STKHRSISKEARDKARARARERTAEKKNKKKKK 245
                  44444.445899**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-37112241IPR005333Transcription factor, TCP
PROSITE profilePS5136935.418113171IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.544221238IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MFIPNLDPTD TLNPNNHTPP TTTSASLTSL VHEDHYYHYF SPNPFLYYAP NHDFLDDPSP  60
IILDHDQDHR LPPPPPPPIP EEEEDEEDKM MMMKKKRSEV KVIRKRSTSR GGKKDRHSKI  120
YTAKGARDRR MRLSLPIARR FFDLQDMLGF DKASKTIEWL FTMSKSAIQD LQIDVCTTCS  180
TSTCSEISTE VVVMSSAKST RNEKVKMESC IASTKHRSIS KEARDKARAR ARERTAEKKN  240
KKKKKKMLEE SSYYYSGLPC SSIVDEQCPP CSNSLKTPIS SALPSSSSSL LGLDSGGSEL  300
FMIMGSQYWQ QVFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-13118171154Putative transcription factor PCF6
5zkt_B9e-13118171154Putative transcription factor PCF6
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237245KKNKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021713
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100217130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-25TCP domain protein 12