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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | SBP | ||||||||
Protein Properties | Length: 521aa MW: 57220.3 Da PI: 6.866 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.8 | 5.7e-42 | 172 | 247 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ keyh+rhkvC+vhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Lus10021141 172 CQVYGCNKDLSSSKEYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLPEFDDGKRSCRKRLAGHNERRRKPQ 247 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.2E-33 | 165 | 233 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.394 | 169 | 246 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.0E-39 | 170 | 249 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-31 | 172 | 245 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MEYSSYGSNG TAAFVSSETT MSSSSSDTFT RSRTGSLLDW DLRRALVSSA PFVENQSFGE 60 MWGYCHHEVV AKALPLPHGS VRYHLNSKGE TEECIKNPFV VSSSALCLED ESSSRLSVSS 120 SVLEYSTNSS KDHSSASFID LKLGRVGDPS KLYTPPKRAR FGGANSNAAA HCQVYGCNKD 180 LSSSKEYHKR HKVCDVHSKT AKVIVNGIEQ RFCQQCSRFH LLPEFDDGKR SCRKRLAGHN 240 ERRRKPQVGL HSGRAARLIQ AYNGFPNGRI QETGLTSSFI CQDILPETLL YPERYNANEY 300 WFRRVKHEDE ESNMSPNLSG IHHLQSEQPL YPFEKMFPAF ADGVVTTPSG SIFSENSNRY 360 PLDVGGSNSS SHCLVPQGTS SLGNDEFITL DAAASVTIQG LSGVTIADSS STGCALSLLS 420 SQSQSSSSSQ SSGIPLAGHH YSMNHQQQVS GRMIRFGLST EASHLMSPLL LSHLEDNNTN 480 GEDTTTIDLL QLSSQLHRVE HEKQKSLQQL EQDAAEGYHW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 162 | 245 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021141 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021665393.1 | 1e-127 | squamosa promoter-binding-like protein 6 isoform X4 | ||||
TrEMBL | A0A067K5H8 | 1e-127 | A0A067K5H8_JATCU; Uncharacterized protein | ||||
STRING | Lus10021141 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-44 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10021141 |