PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020923
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 314aa    MW: 34037.4 Da    PI: 8.3119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020923genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05137156120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C k+F+r  nL+ H+
  Lus10020923 137 FSCQVCFKTFNRYNNLQMHM 156
                  89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-5125159No hitNo description
PROSITE profilePS5015710.201137164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4137156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576672.5E-5203241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEPSSELCVI SSCMYSCSLA GGSASSSSSS SSSSSSSCTN PAIKALDLFP GATDSSTTSP  60
PESYLAPLDL VSKLQKPHDE DVTVALQIGL PDHHHYPDNR DKYCSSMDNV PIATNNVASS  120
QYWIPTHEQI LIGFTHFSCQ VCFKTFNRYN NLQMHMWGHG SQYRKGPESL KGTQPRFMME  180
VPCYCCAAGC KNNIEHPRAK PLKDFRTLQT HYKRKHGVKP FMCRKCGKLL AVKGDWRTHE  240
KNCGKSWLCM CGSDFKHKRS LKDHVKAFGS GHGSLVSSSN SPSSTCSSSL DAGGGGGDMM  300
VHDNVGSSST SVV*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020923
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645159.11e-118PREDICTED: protein TRANSPARENT TESTA 1-like
RefseqXP_022772297.11e-118protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-105TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A1Q3B6Q81e-117A0A1Q3B6Q8_CEPFO; Zf-C2H2_4 domain-containing protein
STRINGLus100209230.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]