PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019949
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 394aa    MW: 41778.9 Da    PI: 6.6181
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019949genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP301.8e-092102604695
          TCP  46 ktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                  +tie Llqqa+pai+++tgt++++a+++  ++s +ss+s+ s+++++++ +
  Lus10019949 210 ETIEGLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPASKSAPH 260
                  9************************99988888888888666663333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-8210376IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MELTDLQNNN NNNNSNKQQQ QQQQPNNNSS QEPHHHPHHH LQYQQFRFDG RSPIGGGGGG  60
GGGPSHSPFM GSISFQPVSM SRPPLHLQQH TSTSSSSSSS PSTTPSSSAP SPHLVDASLA  120
ISTRSGSLPS DSTAHKQINE QSTNHHNLAI VPAATNTTTA GGGGPKEAGK DRENIFVGRX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE TIEGLLQQAE PAIIAATGTG TIPANFSTLN  240
VSLRSSGSTL SAPASKSAPH SFHAAAAAGP TEAQMWPFST SAGNTPPIQA PLHFMPRFNL  300
SPQNLDFQGG RASPLQLGSM VMPPPPTTQA PSQHLGLGMS ESNLGMLAAL NAYSRGGLNA  360
SSEHSHHHHH QQQQQQTNSE NDDDEEEDPN SSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019949
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8871116e-79HQ887111.1 Linum usitatissimum clone GMU2AYZ01BBPUQ microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5Q4R26e-50A0A2P5Q4R2_GOSBA; Uncharacterized protein
STRINGLus100199490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.15e-16TCP family protein