PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019269
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 473aa    MW: 53555.6 Da    PI: 4.6785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019269genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054161177117
                  EEETTTTEEESSHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                  y+Cp+Cgk+++  + L+
  Lus10019269 161 YVCPNCGKRYNALDALQ 177
                  9**********999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134430.8457138IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SuperFamilySSF467854.01E-73897IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005316.8E-5839209IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
PfamPF020022.0E-74099IPR024550TFIIEalpha/SarR/Rpc3 HTH domain
Gene3DG3DSA:1.10.10.102.7E-54294IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.30.40.101.3E-19147205IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577831.11E-8149200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MMSLEPWNRL VKLAARAFYD DYTTKGENQP KIARSDNRGM AVVILDALTR RQWVREEDLA  60
KDLKMHTKQI RRTLRFFEEE KLVTRDQRKE TAKGAKQYSA AVAATTEVQN GKEGEDKVKL  120
LLHSYCCLDY AQIYDVVRYR LHRLKKKLRE ELEEKNTIQE YVCPNCGKRY NALDALQLVS  180
MVDEYFHCEN CNGELVAEND KLSVADGDTD DNARRRRREK LKDLLQKMET QLKPLTEQLN  240
RVKDLQVPDF GNLLAWEARA IAAGRDLNGS NSNDPSKATQ GYGAPLPYLG ETKVEVAFSG  300
TDGKEEDTKP DNAGSGLKVL PPWMIKQGMN LTKEQRGEIK HESKMDGDIS SSAFSDDKKS  360
AVVDEKQSIQ DEYVKAYYAA ILKQQEELEA ARKQEELRAA PNLNAPPPES SPERQVGMKS  420
KREEDDEEDD DWEDGAAAGG NGSSEGYRLN DLNEEAKATP EDEDDDIDWE EG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fyw_W6e-131029412244TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5fz5_W6e-131029412244TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5sva_h6e-131029412244Transcription initiation factor IIE subunit alpha
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RLKKKLR
2214219RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019269
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8885021e-40HQ888502.1 Linum usitatissimum clone GMU2AYZ01AXRGQ microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021273861.10.0transcription initiation factor IIE subunit alpha isoform X1
TrEMBLA0A061DME10.0A0A061DME1_THECC; General transcription factor IIE subunit 1 isoform 3
STRINGLus100192690.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2430811