PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018633
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 446aa    MW: 49955.6 Da    PI: 8.1988
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018633genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05828323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++Cgk F r  nL+ H r H
  Lus10018633  8 CEICGKGFQRDQNLQLHRRGH 28
                 *******************88 PP

2zf-C2H211.10.001282104123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C k++  +s+ k H +t+
  Lus10018633  82 WKCEKCAKRYAVQSDWKAHSKTC 104
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.23E-6528No hitNo description
Gene3DG3DSA:3.30.160.603.8E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.489628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.23E-677102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EIRKRVYVCP EKSCVHHHPS  60
RALGDLTGIK KHFCRKHGEK KWKCEKCAKR YAVQSDWKAH SKTCGTREYK CDCGTLFSRR  120
DSFITHRAFC DALAEETARM NAASSITSFS TLSNYNNLMG GQHHHNNNIM NPHNFSSMFK  180
PMISSSNTNE HQHQHQHQHP EEEEAELVLN NQHHHHQDRS GSLAFWMNQG LHQPQHQQEV  240
IVHVMPNGTS TNTSHQDHHQ IQQLGGSITS GEMFVPCTSS NPQSDHQHQH FDLSWPIVGL  300
NNVKELGHGS TELQSVPSLH QQASANMSAT ALLQKAAQMG ATSSSDNHHQ SKLCGLYGTS  360
TNSNCTSTSS LLFGSLHELE SLNSSTHMDQ LEQMQVMYPP LKRQRTFQSS DQDCGGGGQT  420
RDFLGVGAVQ AAAALCHPSS INGWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3678144369Zinc finger protein JACKDAW
5b3h_F1e-3678144369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018633
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630010.11e-150zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-121IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2C9UUT01e-149A0A2C9UUT0_MANES; Uncharacterized protein
STRINGLus100186330.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-112C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]