PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017229
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 169aa    MW: 17967.6 Da    PI: 8.8362
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017229genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27.1e-0679101123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C++ F+++  L  H++ H
  Lus10017229  79 FECHYCSRNFPTSQALGGHQNAH 101
                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-675107No hitNo description
PfamPF139122.3E-778103IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.59379106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGAERETHDF LNVESFSQLP FIRPSPPPIR LFGSELSICT TAAAAKSVVD KESSPPVAES  60
STTNNTISNG SSSNNNRRFE CHYCSRNFPT SQALGGHQNA HKRERQHAKR AHHHGYVAAT  120
DAPFYAYRTT PAAIAAGHAP FSSYSSWNGG GSASRFYSGG GSVGGSFD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017229
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459255.17e-45zinc finger protein 8
TrEMBLA0A1R3HEU32e-43A0A1R3HEU3_9ROSI; Putative nucleic acid binding protein
STRINGLus100172291e-121(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.12e-31C2H2 family protein