![]() |
Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10015651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 237aa MW: 26242.2 Da PI: 9.0382 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.4 | 5.9e-24 | 66 | 108 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk + Lus10015651 66 LEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKATV 108 69*************************************9765 PP | |||||||
2 | QLQ | 63.8 | 4.4e-22 | 16 | 50 | 1 | 35 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 s+FTa+Q+q+L++Q+l+yKy+++++P+Pp+Ll ++ Lus10015651 16 SPFTATQWQELEHQALIYKYMVSGLPIPPQLLSPL 50 89******************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.6E-11 | 16 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.3E-16 | 17 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.126 | 17 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.862 | 65 | 109 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.0E-20 | 67 | 106 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MLSTRTTNTN SSSCSSPFTA TQWQELEHQA LIYKYMVSGL PIPPQLLSPL TWGSCFQVGF 60 SKKTDLEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKATVDV SSSSSSCARN 120 VLANVNGVGG INQYGQSALF TDSAANSVSS PCQVHLPDYN RYVHGVKVED NMQQLSSSSS 180 SKGYYCSPQS DLQSFPYPSM RPIISYSHET QKPLHQFFGG TTDHSWLDLA SSSRPS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | POPTR_0018s07140.1 | 4e-47 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-42 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10015651 |