PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015651

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRF

Protein Properties

Length: 237aa MW: 26242.2 Da PI: 9.0382

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015651	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.4	5.9e-24	66	108	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk + Lus10015651 66 LEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKATV 108 69*************************************9765 PP
2	QLQ	63.8	4.4e-22	16	50	1	35
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 s+FTa+Q+q+L++Q+l+yKy+++++P+Pp+Ll ++ Lus10015651 16 SPFTATQWQELEHQALIYKYMVSGLPIPPQLLSPL 50 89******************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.6E-11	16	52	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.3E-16	17	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.126	17	52	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.862	65	109	IPR014977	WRC domain
Pfam	PF08879	5.0E-20	67	106	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MLSTRTTNTN SSSCSSPFTA TQWQELEHQA LIYKYMVSGL PIPPQLLSPL TWGSCFQVGF 60 SKKTDLEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKATVDV SSSSSSCARN 120 VLANVNGVGG INQYGQSALF TDSAANSVSS PCQVHLPDYN RYVHGVKVED NMQQLSSSSS 180 SKGYYCSPQS DLQSFPYPSM RPIISYSHET QKPLHQFFGG TTDHSWLDLA SSSRPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	POPTR_0018s07140.1	4e-47	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14195	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-42	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Lus10015651