PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014974
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 579aa    MW: 65464.3 Da    PI: 7.6405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014974genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00097798223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 kC +C++ F ++ n++rH r+H
  Lus10014974 77 KCDKCSREFCSSINYRRHVRVH 98
                 7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.30576103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MPVVKQKAGN TTDVMKSEEG NDSLDTFIRQ AMGKEPLLSF PRTNDNPVQW IQLLQALDQQ  60
DGPGWPLLTP LKVQMQKCDK CSREFCSSIN YRRHVRVHHR LKKLDKDTTK IRNLLDAFWE  120
KLSEDEAKEI LSFKDVALEE VSGSSIIKSL MALNRKQGLC PLPQYCLRAG TALLDLIQGR  180
FLYPLSSEEL FSILDDASEK MFLCGAAISM EKYIFEGEAA KNGLETKNIV ACTSFLVEQK  240
LVKAWLADKD AEALRCQKLL VEEEEAAQRR QAELLERKRL KKLRQKEQRA KEHQQEAKPD  300
TLEEPAELPC STACSSNSHD MEIPADPFSS SSEPIQLADI EDGDFDLEGQ IGYSNGGGAG  360
RIYYPAMGNY RGGRWPQKLQ WNSHTPNGFL RKWSRKNRVV EYGWETSIPR TEKLVINQQQ  420
PEDDHAKKRE VLIGSISVAL CSEDSNDREV ERKNSRGTVK QWRPVSRKGT KGQAQEDEFA  480
PRESSPDENL RPSRFQFSCQ AAKAFLAERW KEAMAAEHVK LVLTLDSGTY LQRNGNVEET  540
LVHESSSSIS IGGGKEFLRG KPEKGVKLKY IPKQRTLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282ERKRLKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014974
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090229.10.0uncharacterized protein LOC105648450 isoform X1
TrEMBLA0A067JEM20.0A0A067JEM2_JATCU; Uncharacterized protein
STRINGLus100149740.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-124C2H2-like zinc finger protein