PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014852
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 453aa    MW: 49889.5 Da    PI: 5.6002
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014852genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.51.2e-93504492373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalkl..fsevsPilk 92 
                  ++lL++cA+a++++d++laq++L+ l+++a pdgd++qRl+  f++AL ar a+  +++++ l+++ +s++n      ++++++++l  f +++P+++
  Lus10014852  50 EQLLVHCANAIQTNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALVARAAK--TGTCQLLAARYSSTYNnlvpiPTHRFSVVELasFIDLTPWHR 145
                  79****************************************************..888888888888888867777566666666688********* PP

         GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvl 181
                  f++ +aN+aIl+++eg + vH +D++ ++++Q p+L++a++sR ++pp +R+T+ ++ e+             ++ee+g++L +fA++ +v +ef+v+
  Lus10014852 146 FGFTAANSAILDSIEGYSSVHLVDLGSTHCMQIPTLIDAISSRFDPPPLIRLTVAAAYEERstttlpppvLDLSYEELGSKLVNFARSRNVAMEFRVV 243
                  *****************************************************9998777678899988778899**********************9 PP

         GRAS 182 ...vakrledleleeLrvkp..........gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                     +++ +++l +e+Lr+++           Eal++n++++lh++ de++ ++s  +r+ +Lkl++sl+P+ vvvve++a++++++++ r+ +a++y+
  Lus10014852 244 tssYSDGFQSL-IEHLRIQQvlysessstsTEALVINCHMMLHYIQDETTLSSSmsAREVFLKLIRSLEPTAVVVVEEDAELSGGNLVSRLRSAFNYF 340
                  66533344444.666666666666688888****************99887666679***************************************** PP

         GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                  +  fd++ea lp+ s++r+++E+e + ++i+nv+a+eg +r+er e +++W +r+++a Fk v ++e+ +++++ +l +++ ++g + ee+++ l+l+
  Lus10014852 341 WIPFDAVEAFLPAGSRQRQWYEAE-VCWRIENVIAQEGVQRVERGEGKSSWVQRMRNAAFKGVGFGEECVAEVRGMLGEHAaGWGLKKEEDDQHLLLT 437
                  ************************.999*****************************************************9**************** PP

         GRAS 362 WkdrpLvsvSaW 373
                  Wk++++++++aW
  Lus10014852 438 WKGHNVIFATAW 449
                  ************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.34523429IPR005202Transcription factor GRAS
PfamPF035144.2E-9150449IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MINNNNNNKN QQTGLGGGGG GVLGQWPGLL PITTTTSKSF GNFGDANCME QLLVHCANAI  60
QTNDATLAQQ ILWVLNNIAP PDGDSNQRLT CAFLRALVAR AAKTGTCQLL AARYSSTYNN  120
LVPIPTHRFS VVELASFIDL TPWHRFGFTA ANSAILDSIE GYSSVHLVDL GSTHCMQIPT  180
LIDAISSRFD PPPLIRLTVA AAYEERSTTT LPPPVLDLSY EELGSKLVNF ARSRNVAMEF  240
RVVTSSYSDG FQSLIEHLRI QQVLYSESSS TSTEALVINC HMMLHYIQDE TTLSSSMSAR  300
EVFLKLIRSL EPTAVVVVEE DAELSGGNLV SRLRSAFNYF WIPFDAVEAF LPAGSRQRQW  360
YEAEVCWRIE NVIAQEGVQR VERGEGKSSW VQRMRNAAFK GVGFGEECVA EVRGMLGEHA  420
AGWGLKKEED DQHLLLTWKG HNVIFATAWI PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-523645174474Protein SHORT-ROOT
5b3h_B1e-523645120420Protein SHORT-ROOT
5b3h_E1e-523645120420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908184.10.0scarecrow-like protein 32
SwissprotQ9SN221e-177SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2P5XRM20.0A0A2P5XRM2_GOSBA; Uncharacterized protein
STRINGLus100148520.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77023347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-179GRAS family protein