PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013814
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 216aa    MW: 23134.2 Da    PI: 10.1581
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013814genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.24.5e-3256130366
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........s 66 
                   +++++s++h+kv gR+RRvRl+a+caar+F+L++eLG+ +d++t+eWLl+ a+++++++tgt           +
  Lus10013814  56 RRRSSSSDRHSKVYGRGRRVRLPALCAARIFQLTRELGHRSDGETVEWLLRHAEKSVIAATGTgiiptvpisstT 130
                  58999**********************************************************555555444430 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2660127IPR005333Transcription factor, TCP
PROSITE profilePS5136924.71761115IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MASSSTTFAV SDHLHQPQNH HHQSLHSLAL VPTTAAAESQ LATTTTTSSA VIPRPRRRSS  60
SSDRHSKVYG RGRRVRLPAL CAARIFQLTR ELGHRSDGET VEWLLRHAEK SVIAATGTGI  120
IPTVPISSTT GPPPIAVSPS SIPCRTRTIL TGHHGMFTPT PPPPSFHLDL EYRNMPFTAL  180
LLQPMAAAAA AAAASGGEGR QEEEKVFEDM KKQEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013814
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021660612.12e-59transcription factor TCP11-like
TrEMBLA0A2C9VCC98e-57A0A2C9VCC9_MANES; Uncharacterized protein
STRINGLus100138141e-154(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-27TCP family protein