PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012602
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 702aa    MW: 76859 Da    PI: 5.4758
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012602genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.47e-082451129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     r rWT eE+ ++++a k++G   W +I +
      Lus10012602 24 RERWTVEEHNRFLEALKLYGRA-WQRIEA 51
                     78******************88.**9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.06E-51849IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-42452IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDTNSSGEDL FIKTRKPYTI TKQRERWTVE EHNRFLEALK LYGRAWQRIE AKENLNSQLE  60
KEAVAKGVPI GQALDIDIPP PRPKRKPSNP YPRKTGFSSI TSKDGKVSTS LPVPRNQQVL  120
DLETEPLPEK PSVDEKSTGA KGIHDDSCSE VFTSSSSVYS LKKYPTPQQE GPTSPGSFRE  180
FIPRLKDVVS QDAPNELHFT TEFDGNTLQM ENSYHLHDNI QQGKKVDDHT NILPGDKMQS  240
MQNFLEHIPM QILDGKTCTQ TPSSDVPRHK SIVPGGESQA QSTVYSLLTT STAEIQNNFP  300
ASLHPSFPPV VRSQDEYRSF LQISSTFSSL VVSTLLQNPA AHAAASFAAS FWPFANVENA  360
ADSTACTKEV FSSREVNSAP SMASIAAATV AAATAWWAAH GLLPMCAPLQ TAFPCPPATT  420
VPGDAKMESK EVSLEDAPLN DEWMEPEHLE AAQAQNSFSK SSDKYSSECE ENGGFKPNPT  480
PKVPHQETNA TPPEVHDCNK SKNRKQVDRS SCGSNTASSS EVETDALEKH EKDKGETKEA  540
ETNPPTPADS RRSRSNNVST SDSWKSVSEE GRLAFRALFS REVLPQSFSP PPKGEGKNGQ  600
HEADSDEVQM PYANGRNGDS EVLDLNSSKT WCQEGEEKNP SIPSCFSAVG VGNGKLKGQR  660
TGFKPYKRCS VEAKENRSCS CQGEEKESKR ICLGLEPEAS T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012602
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611101.10.0protein LHY-like isoform X2
TrEMBLA0A251LUQ00.0A0A251LUQ0_MANES; Uncharacterized protein
STRINGLus100126020.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48602537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.33e-77MYB_related family protein