PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012226
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 322aa    MW: 35850.6 Da    PI: 4.3036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012226genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-1962120155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr++  +g+WvAeIr+p+   g   k+  r +lg+f ta eAa a+++a+++++g
  Lus10012226  62 CRYRGVRQRT-WGKWVAEIREPVLmTGstkKKgSRLWLGTFETAVEAAMAYDNAARSMYG 120
                  78*****999.**********999977796447************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1262120IPR001471AP2/ERF domain
CDDcd000181.26E-2962129No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2963129IPR001471AP2/ERF domain
PROSITE profilePS5103222.8463128IPR001471AP2/ERF domain
SMARTSM003807.9E-3763134IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1963129IPR016177DNA-binding domain
PRINTSPR003673.1E-106475IPR001471AP2/ERF domain
PRINTSPR003673.1E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEDFSSIQKR TQRRRICGGD ESVEETLERW KKQTKLLKKK NPPKGSKKGC MRGKGGPENL  60
TCRYRGVRQR TWGKWVAEIR EPVLMTGSTK KKGSRLWLGT FETAVEAAMA YDNAARSMYG  120
GSAVLNFPNG VVNDDDQSNN PSSSPATETG TEISSASFDE GVVTMEELIK REVAEEEPEV  180
QNTKMMNGTE GVNLKDEGLD GELEEFMKYC SSWALNSNTE EEEEEEEERM VKLEEVNGNE  240
QTNSGGTTTT SDVAYHTDFG RETSLNPDVY PCGGSSFEEP FRIDTGVEWS GAEVIDWSMV  300
EGEPGVPPDM MLFHDPEFGF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1964128360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038KKQTKLLKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597142.11e-46PREDICTED: dehydration-responsive element-binding protein 2C-like
RefseqXP_016465777.11e-46PREDICTED: dehydration-responsive element-binding protein 2C-like
SwissprotA2WL192e-43DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
STRINGLus100122260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.19e-33ERF family protein