PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011831
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 134aa    MW: 14569.9 Da    PI: 6.8116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011831genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17e-212273256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrd + ng  +r++lg+f++aeeAa+a+++a+ +++g+
  Lus10011831 22 KYRGVRRRP-WGKFAAEIRDSTRNG--QRIWLGTFDSAEEAARAYDRAAYAMRGH 73
                 8********.**********44465..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.68E-182281No hitNo description
PfamPF008471.6E-152273IPR001471AP2/ERF domain
SMARTSM003805.0E-362286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-312282IPR001471AP2/ERF domain
PROSITE profilePS5103223.6442280IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-242282IPR016177DNA-binding domain
PRINTSPR003672.4E-112334IPR001471AP2/ERF domain
PRINTSPR003672.4E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDNQATGEEE GGGGGGGGGE VKYRGVRRRP WGKFAAEIRD STRNGQRIWL GTFDSAEEAA  60
RAYDRAAYAM RGHIAVLNFP HEYPMGRGPA SAAASAAAGS SSNSRQVVEL EYLDNRLLDE  120
MLEQEENRRR RHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-38121174114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011831
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659387.11e-46ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A078IN683e-45A0A078IN68_BRANA; BnaC09g17590D protein
TrEMBLA0A3P6EFT93e-45A0A3P6EFT9_BRAOL; Uncharacterized protein
STRINGLus100118312e-91(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.12e-33Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]