PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 147aa    MW: 16820.4 Da    PI: 5.3696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011830genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-182171255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+++AeIrdp  +g   r +lg+++t eeAa+a+++a+  ++g
  Lus10011830 21 KYRGVRRRP-WGKYAAEIRDPARRG--CRLWLGTYDTGEEAARAYDRAAFDIRG 71
                 8********.**********95443..**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-332185IPR001471AP2/ERF domain
PfamPF008471.3E-142171IPR001471AP2/ERF domain
CDDcd000182.47E-282180No hitNo description
SuperFamilySSF541713.92E-232180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-312181IPR001471AP2/ERF domain
PROSITE profilePS5103224.5262179IPR001471AP2/ERF domain
PRINTSPR003671.1E-102233IPR001471AP2/ERF domain
PRINTSPR003671.1E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEARKSIISG GEDEHHQQEV KYRGVRRRPW GKYAAEIRDP ARRGCRLWLG TYDTGEEAAR  60
AYDRAAFDIR GNLAILNFPN EYYLRRPSSS SPNNVAGGRD GRDLEDEGGR KKEKQVLELE  120
YLDDSVLDEL LQHSLQEDNH KSQTEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-312112614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233066.12e-44PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1J6KS495e-43A0A1J6KS49_NICAT; Ethylene-responsive transcription factor erf098
STRINGLus100118301e-103(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-41ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]