PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011495
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 118aa    MW: 13362.9 Da    PI: 4.4868
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011495genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000243349521
                 TTTEEESSHHHHHHHHH CS
      zf-C2H2  5 dCgksFsrksnLkrHir 21
                 +Cg+sFsrk+ L  H+ 
  Lus10011495 33 NCGTSFSRKDKLFGHMA 49
                 7**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.84E-5248No hitNo description
Gene3DG3DSA:3.30.160.609.7E-42449IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MYTCSRCNKK NFSVEADLRS HFKHCGELRW KCNCGTSFSR KDKLFGHMAL FEGHMPAARE  60
EEDGGEEVKM MVQQEEDDGN GEGLLFDDGF GSMEDVLEYP ASPDWQREMS LFCGFGQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011495
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4615131e-167GQ461513.1 Linum usitatissimum clone LU0CT0E26 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631166.12e-34protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ943I63e-25STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2C9UW635e-33A0A2C9UW63_MANES; Uncharacterized protein
STRINGLus100114952e-82(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-26C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]