PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011076
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 451aa    MW: 49599.2 Da    PI: 5.4202
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011076genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3021.4e-92444472373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalkl..fsevsPilk 92 
                  ++lL++cA+a++++d +laq++L+ l+++a pdgd++qRl+  f++AL ar a+  +++++ l+++ +s++n      ++++++++l  f +++P+++
  Lus10011076  44 EQLLVHCANAIQTNDSTLAQQILWVLNNIAPPDGDSNQRLTCAFLRALVARAAK--TGTCQLLAARYSSTYNnlvpiPTHRFSVVELasFIDLTPWHR 139
                  79****************************************************..888888888888888867777566666666688********* PP

         GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg............skeeleetgerLakfAeelgvpfef 178
                  f++ +aN+aIl+++eg + vH +D++ ++++Q p+L++a++sR ++pp +R+T+v+++e+g               ++ee+g++L +fA++ +v +ef
  Lus10011076 140 FGFTAANSAILDSIEGYSSVHLVDLGSTHCMQIPTLIDAISSRFDPPPLVRLTVVAAAEEGtpattlpppppvLDLSYEELGSKLVNFARSRNVAMEF 237
                  *********************************************************99989999***9998878899******************** PP

         GRAS 179 nvl.......vakrledleleeLrvkp......gEalaVnlvlqlhrlldesvs..leserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                  +v+         + +e l+++++  ++       Eal +n++++lh++ de +s  l s+r+ +Lk ++sl+P+ vv+ve++a++++++++ r+ +a+
  Lus10011076 238 RVVtssysdgFQSLIEHLRIQQILYSEsssastAEALMINCHMMLHYIQDEATSssLVSAREMFLKSIRSLEPTAVVMVEEDAELSGGNLVSRLRSAF 335
                  **9766444433444555666663333667777***************988665115569************************************** PP

         GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                  +y++  fd++ea lp+ s++r+++E+e + ++i+nv+a+eg +r+er e +++W +r+++a Fk v ++e+  ++++ +l +++ ++g + ee+++ l
  Lus10011076 336 NYFWIPFDAVEAFLPAGSRQRQWYEAE-VCWRIENVIAQEGVQRVERGEGKSRWVQRMRNAAFKGVGFGEECLAEVRGMLGEHAaGWGLKREEDDQHL 432
                  ***************************.999*****************************************************9************* PP

         GRAS 359 vlgWkdrpLvsvSaW 373
                  +l+Wk++++ +++aW
  Lus10011076 433 LLTWKGHNVAFATAW 447
                  *************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.27817427IPR005202Transcription factor GRAS
PfamPF035144.9E-9044447IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSNNNQQTGS GGGVLSQIQW PGLLPITTTT SKSFGNFGDA NCMEQLLVHC ANAIQTNDST  60
LAQQILWVLN NIAPPDGDSN QRLTCAFLRA LVARAAKTGT CQLLAARYSS TYNNLVPIPT  120
HRFSVVELAS FIDLTPWHRF GFTAANSAIL DSIEGYSSVH LVDLGSTHCM QIPTLIDAIS  180
SRFDPPPLVR LTVVAAAEEG TPATTLPPPP PVLDLSYEEL GSKLVNFARS RNVAMEFRVV  240
TSSYSDGFQS LIEHLRIQQI LYSESSSAST AEALMINCHM MLHYIQDEAT SSSLVSAREM  300
FLKSIRSLEP TAVVMVEEDA ELSGGNLVSR LRSAFNYFWI PFDAVEAFLP AGSRQRQWYE  360
AEVCWRIENV IAQEGVQRVE RGEGKSRWVQ RMRNAAFKGV GFGEECLAEV RGMLGEHAAG  420
WGLKREEDDQ HLLLTWKGHN VAFATAWIPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-523044974474Protein SHORT-ROOT
5b3h_B3e-523044920420Protein SHORT-ROOT
5b3h_E3e-523044920420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908184.10.0scarecrow-like protein 32
RefseqXP_022741309.10.0scarecrow-like protein 32
SwissprotQ9SN221e-176SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2P5XRM20.0A0A2P5XRM2_GOSBA; Uncharacterized protein
STRINGLus100110760.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77023347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-169GRAS family protein