PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010747
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 195aa    MW: 22320.8 Da    PI: 4.7919
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010747genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.81.1e-3231201128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                  lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+ +e ++wyf+s++          nr+t++g Wk+ g +++++s+  +
  Lus10010747   3 LPPGFRFYPTDEELVVHFLHRKATLLPCHP-DVIPDLDLYPYDPWDLHGKALEEGNQWYFYSRKT--------LNRVTDNGLWKTIGMEEPIISSsgN 91 
                  79*************************999.99**************977777899*****9974........58*******************9777 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ vg+kk L+f+ g +    kt+W+m+e+rl
  Lus10010747  92 NRRVGVKKYLMFFLGGDV---KTNWIMEEFRL 120
                  778**********77665...6********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-441159IPR003441NAC domain
PROSITE profilePS5100542.5883160IPR003441NAC domain
PfamPF023652.2E-204120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MNLPPGFRFY PTDEELVVHF LHRKATLLPC HPDVIPDLDL YPYDPWDLHG KALEEGNQWY  60
FYSRKTLNRV TDNGLWKTIG MEEPIISSSG NNRRVGVKKY LMFFLGGDVK TNWIMEEFRL  120
PDSSSTTTGT SSSTSRSSRS TRSRSRPDYN KWVVCRVYER NSSDDDEDGS TGLSCLDEVF  180
LSLDDLDDIS LPYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-34116315168NO APICAL MERISTEM PROTEIN
1ut4_B1e-34116315168NO APICAL MERISTEM PROTEIN
1ut7_A1e-34116315168NO APICAL MERISTEM PROTEIN
1ut7_B1e-34116315168NO APICAL MERISTEM PROTEIN
3swm_A2e-34116318171NAC domain-containing protein 19
3swm_B2e-34116318171NAC domain-containing protein 19
3swm_C2e-34116318171NAC domain-containing protein 19
3swm_D2e-34116318171NAC domain-containing protein 19
3swp_A2e-34116318171NAC domain-containing protein 19
3swp_B2e-34116318171NAC domain-containing protein 19
3swp_C2e-34116318171NAC domain-containing protein 19
3swp_D2e-34116318171NAC domain-containing protein 19
4dul_A1e-34116315168NAC domain-containing protein 19
4dul_B1e-34116315168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010747
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028753201.16e-90NAC domain-containing protein 104-like
SwissprotQ8GWK66e-88NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A3P6AL412e-88A0A3P6AL41_BRACM; Uncharacterized protein
TrEMBLM4ESY52e-88M4ESY5_BRARP; Uncharacterized protein
STRINGLus100107471e-141(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-67xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]