PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010177
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 311aa    MW: 33107.9 Da    PI: 11.1277
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010177genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.32.8e-3864149286
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                  ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s +ssa++++
  Lus10010177  64 TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStVSASVRSSAAAPT 149
                  689*****************************************************************988843333333333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.20970124IPR017887Transcription factor TCP subgroup
PfamPF036344.1E-3370146IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSSSDAAAAH SNGVSNGGSM MIHHRQQQQQ QQQQQQLIHH LPPPSSPVPA VSAAGGNGGN  60
GVLTVKKPPS KDRHSKVDGR GRRIRMPIIC AARVFQLTRE LGHKSDGQTI EWLLRQAEPS  120
IIAATGTGTT PASFSTVSAS VRSSAAAPTL ASFSSNSMDH KPLLGPAPFI LGKRVRSDDD  180
SANNGGDKDD GGGVGVPVGH SVASLVAPTP LNGPGGVCAG PWMECVXXXX XXWAGVFLPP  240
PRWRWARSAP HSMSTSSKLR RGRRPPLWGR HQLPESEITF LATSICWRSY QVGRVIPTGE  300
RRINVEWSES *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010177
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628682.17e-68transcription factor TCP21-like
TrEMBLA0A2C9V0D42e-66A0A2C9V0D4_MANES; Uncharacterized protein
STRINGLus100101770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-37TCP family protein