PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009298
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 229aa    MW: 24992.9 Da    PI: 7.5728
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009298genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.1e-3818117199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+k+C+++pyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lq+q+ +l+ael ++
  Lus10009298  18 PCGACKFLRRKCVKGCIFSPYFDSEQgTAHFAAVHKVFGASNASKLLMRIPPHHRLDAVVTLCYEALARVRDPVYGCVAHIFTLQHQVVNLQAELGYI 115
                  7***********************9989******************************************************************9988 PP

       DUF260  98 ke 99 
                  ++
  Lus10009298 116 QA 117
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.89517119IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3718115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSNSGGERGG GGGGAAPPCG ACKFLRRKCV KGCIFSPYFD SEQGTAHFAA VHKVFGASNA  60
SKLLMRIPPH HRLDAVVTLC YEALARVRDP VYGCVAHIFT LQHQVVNLQA ELGYIQARLA  120
NLHGTSVFGQ LTTSHQPQPP QQPHHQTTSH SLVPATTEAA GTLGCINDNY YNNYKNAVQY  180
ADNNQYNNWS EISSSSSNNM YDEEEMEEMA REFVARYLPG VRFPKPSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090856.11e-80PREDICTED: LOB domain-containing protein 19
SwissprotO221324e-62LBD19_ARATH; LOB domain-containing protein 19
TrEMBLM5X8002e-76M5X800_PRUPE; Uncharacterized protein
STRINGVIT_15s0048g00840.t017e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-57LOB domain-containing protein 19