PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008698
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 345aa    MW: 36823.6 Da    PI: 8.4762
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008698genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022146168123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C++ Fs++  L  H++ H
  Lus10008698 146 FSCNFCKREFSTSQALGGHQNAH 168
                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.85E-6143173No hitNo description
Gene3DG3DSA:3.30.160.609.0E-4144172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.468146173IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEPIAKSENQ SPSNASSISA TASSEGAIRD KKAAGELVNS LKMKEKVSQL SQSSSSSPAA  60
QPPSGTTSSR VVLDLKLSND HHPNRETDKS LQLTLFNNRF NNKEEEGDSS GHPHHYDFLH  120
NTSRVVEVAE EEEGRITESL DQSRVFSCNF CKREFSTSQA LGGHQNAHKT ERAIAKKRQG  180
VEIGGGIGHF PYHPYSTLSS LPFYGSSSFS RSSSSILGLK ADSFIHKPPS SYPWSSPITA  240
ASLAYRSRYG AAPWPRVGPL QSHLDRLRLE SLGALHNNNS TNNKVETISL LKNFGPSNNN  300
CSSNIITIGS GSSQTPLASP SSTSGGGGIV PAAEGSDLDL SLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100086980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-16C2H2 family protein