PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008444
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 89aa    MW: 9504.84 Da    PI: 7.5183
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008444genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP54.35.5e-171552483
          TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83
                 ++a+ca r      eLG++ d++tieWLlqqa+p i+++tgt++++a+++  ++  +ss+s
  Lus10008444  1 MPATCASR------ELGHKFDGETIEWLLQQAEPTIIAATGTGTIPANFStMNVWLRSSGS 55
                 77888866......*********************************88864444444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136911.067133IPR017887Transcription factor TCP subgroup
PfamPF036348.5E-16860IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MPATCASREL GHKFDGETIE WLLQQAEPTI IAATGTGTIP ANFSTMNVWL RSSGSTLSAP  60
ASNMGYYRRL LLQPHFNPPS TLLPSVSV*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008444
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901654.13e-28transcription factor TCP8-like
SwissprotQ9C5181e-26TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A2U1PFL01e-27A0A2U1PFL0_ARTAN; Transcription factor, TCP
STRINGLus100084446e-59(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-18TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]