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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007984 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | SBP | ||||||||
Protein Properties | Length: 517aa MW: 56457.7 Da PI: 7.7655 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.6 | 1.1e-40 | 173 | 249 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dls+ keyh+rhkvC+vhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Lus10007984 173 CQVYGCNKDLSSSKEYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKHQV 249 **************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.9E-33 | 166 | 234 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.035 | 170 | 247 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.71E-38 | 171 | 250 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.3E-31 | 173 | 246 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MEYSSYGSKG STAAFVSNET TMSSSSSDTS TRSRTGSLLD WDLRRALVSS APFVENQSFG 60 EMWGYCHHEV VAKALPLPHG SVRYHLNSKG ETEECIKNPF VVNSSALCLK DESSSRLSIS 120 SSVVEYSTNS SKDHSSASFI DLKLGRVGDP SKLYTPPKRA RFGGANSNAA AHCQVYGCNK 180 DLSSSKEYHK RHKVCDVHSK TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH 240 NERRRKHQVR IHSGRAARLI QAYNGFPSGR IQETGLTSSF ICQDILPGTL LYSERYGANE 300 YSSRRVKHED QESTLSPNLS GISVLEQPLY PFEKMFPAFR DGVVTTPSGS IFSENNNRYP 360 LDAGGSNSSS HCLVPQGTSS LGNDEFITLD AAASPTIQGL SGVTIADSSS TGCALSLLSS 420 QSQSSSSSQS SQIPMAGHHY GMNQQQQVSG RMIRFGLATE ASHLMSPLLL SHLEDHNTNG 480 EDTTTIDLLQ LSSQLHRVEN EKQKSLQQDA AEVYLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 163 | 246 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007984 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021665393.1 | 1e-122 | squamosa promoter-binding-like protein 6 isoform X4 | ||||
TrEMBL | A0A067K5H8 | 1e-122 | A0A067K5H8_JATCU; Uncharacterized protein | ||||
STRING | Lus10007984 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-45 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10007984 |