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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19867.5 Da PI: 6.9306 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.5 | 2.2e-43 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA ar+rdP+yG+vg i+ lq+q++ql+ +lal++ Lus10007525 9 PCASCKLLRRRCAKDCIFAPYFPSHDPHKFAIVHKVFGASNVSKMLQDLPVERRADAVSSLVYEAGARVRDPIYGCVGAISYLQRQVSQLQMQLALAQ 106 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Lus10007525 107 AE 108 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.483 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.5E-43 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVAGASTSPC ASCKLLRRRC AKDCIFAPYF PSHDPHKFAI VHKVFGASNV SKMLQDLPVE 60 RRADAVSSLV YEAGARVRDP IYGCVGAISY LQRQVSQLQM QLALAQAEIL CIAGQQFKAA 120 AAAPNYNLAM ISDDDNYTTN SESSLDDVVL DNNKSLFLLQ HGLQVGQNHH HDDHRQYIDF 180 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471684.1 | 6e-69 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 2e-67 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0D2QTT2 | 7e-69 | A0A0D2QTT2_G | ||||
STRING | Solyc06g082310.2.1 | 2e-67 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400078256 | 2e-67 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 6e-60 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10007525 |