PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10007525

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 181aa MW: 19867.5 Da PI: 6.9306

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10007525	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.5	2.2e-43	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA ar+rdP+yG+vg i+ lq+q++ql+ +lal++ Lus10007525 9 PCASCKLLRRRCAKDCIFAPYFPSHDPHKFAIVHKVFGASNVSKMLQDLPVERRADAVSSLVYEAGARVRDPIYGCVGAISYLQRQVSQLQMQLALAQ 106 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Lus10007525 107 AE 108 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.483	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.5E-43	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MVAGASTSPC ASCKLLRRRC AKDCIFAPYF PSHDPHKFAI VHKVFGASNV SKMLQDLPVE 60 RRADAVSSLV YEAGARVRDP IYGCVGAISY LQRQVSQLQM QLALAQAEIL CIAGQQFKAA 120 AAAPNYNLAM ISDDDNYTTN SESSLDDVVL DNNKSLFLLQ HGLQVGQNHH HDDHRQYIDF 180 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471684.1	6e-69	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-67	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0D2QTT2	7e-69	A0A0D2QTT2_G
STRING	Solyc06g082310.2.1	2e-67	(Solanum lycopersicum)
STRING	PGSC0003DMT400078256	2e-67	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-60	LBD family protein

Link Out ? help Back to Top
Phytozome	Lus10007525