PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007474
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 334aa    MW: 37618.2 Da    PI: 8.0671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007474genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00099829223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 kC+ C + F++   L  H+++H
  Lus10007474  8 KCKLCFRAFPNGRALSGHMKSH 29
                 7********************9 PP

2zf-C2H213.10.00029217238223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  kC++C k F+++  L +H r +
  Lus10007474 217 KCEKCMKQFRSPKALISHRRIC 238
                  8*******************87 PP

3zf-C2H212.70.00039260282123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F +   L  H r+H
  Lus10007474 260 FQCPYCFKVFGSGQALGGHKRSH 282
                  89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.15729IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993734IPR007087Zinc finger, C2H2
PfamPF139120.0018829IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SuperFamilySSF576678.57E-6214282No hitNo description
PROSITE profilePS501578.517216237IPR007087Zinc finger, C2H2
SMARTSM0035521216236IPR015880Zinc finger, C2H2-like
PfamPF139120.05217236IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.803260287IPR007087Zinc finger, C2H2
SMARTSM003550.071260282IPR015880Zinc finger, C2H2-like
PfamPF139125.3E-11260284IPR007087Zinc finger, C2H2
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDGTSRQKCK LCFRAFPNGR ALSGHMKSHS FLHPTFPLLP PRRNQLGHDP DATESSSSSS  60
YSSSEEETEL KLQSIVKSDD VVYGLRENPR KSFRVADPEF SFAGSSSLVQ DRESESAESR  120
KPATGRRSKR TCRKPWGNSD SPVSSVSSDA DEDVAMCLVM LSRDVNNWRR MKKQRFNNNV  180
DVGFEDLKQN GGEIDKEEEE EEVHEMRGIC GKKKKLKCEK CMKQFRSPKA LISHRRICFL  240
INYKGHHHQL RKLQEEERIF QCPYCFKVFG SGQALGGHKR SHLSSRTGSY PSAVDPLPPP  300
PPSPSPPTCS FWDLNLPAAA EEDDEEFSVV YDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119134RKPATGRRSKRTCRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690429.13e-71zinc finger protein ZAT4-like
TrEMBLA0A2C9WDA01e-66A0A2C9WDA0_MANES; Uncharacterized protein
STRINGLus100074740.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.17e-12C2H2-like zinc finger protein