PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007168
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 523aa    MW: 54781 Da    PI: 8.3333
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007168genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-056587123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Lus10007168 65 FVCEICSKGFQRDQNLQLHRRGH 87
                 89*******************88 PP

2zf-C2H215.93.7e-05141163123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC+ C+k +  +s+ k H++t+
  Lus10007168 141 WKCERCTKKYAVQSDWKAHMKTC 163
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.95E-76487No hitNo description
PROSITE profilePS5015710.8876587IPR007087Zinc finger, C2H2
SMARTSM003550.0366587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355210106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.95E-7136162No hitNo description
SMARTSM0035591141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAEVENSSQV TVSGAALSGE ANSVSSFGNQ PTTTTKKKRN LPGMPDPEAE VIALSPVSLL  60
ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKQRSSKE LRKRVYVCPE PSCVHHDPAR  120
ALGDLTGIKK HFCRKHGEKK WKCERCTKKY AVQSDWKAHM KTCGTREYKC DCGTLFSRRD  180
SFITHRAFCD ALAEESIRSN NPPLTVTNNN NPSPSPTVVV SPPPPPHTPS TTVISPGNSV  240
QSSENPAALA SPPATTAAGV TNTSSTCTAS TSNVFASIFA SQTTAPSTIP PSADNSAGVT  300
NTSSTCTAST SNVFASIFAS QTTAPSTIPP SADNSSPSAS AGVAGVGSFS DLLQSFTPSD  360
CPLTITMIEP PSLSLSQPPI NYLSTTAPSS ALLGMGGRGG QEHYGHATTM SATALLQKAA  420
QMGSTTSNQS FLRGLGLQMS PSSTTHSQDT NGNRHPWEVK PESGGLGLGL GLSYGPTTLD  480
LLGLGLGSSP ALLTSYGHGF NIGRSSEETW DNNNTGGAGK EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-36137210372Zinc finger protein JACKDAW
5b3h_F7e-36137210372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534758.11e-166protein indeterminate-domain 2 isoform X2
SwissprotQ9LVQ71e-128IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A067L2Z91e-163A0A067L2Z9_JATCU; Uncharacterized protein
STRINGLus100071680.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-116indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]