PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 162aa    MW: 17973.5 Da    PI: 7.2744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006960genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154769123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F ++  L  H++ H
  Lus10006960 47 FSCNYCERKFYSSQALGGHQNAH 69
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-54474No hitNo description
PROSITE profilePS5015711.1574774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDHDDDEYHY NQVNLNLVLE PSSSSSTTSS PRGGPAADHL HHHPRVFSCN YCERKFYSSQ  60
ALGGHQNAHK LERTLAKKSR DILGGSLGRR VVGGGGWSHH MHGSSSSSTH GGIRVGVKPE  120
RHGQYRNEYG DVAEDRGTSW YVDSDRHVQE EFSHLDLSLR L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698842.18e-28PREDICTED: zinc finger protein 2-like
TrEMBLA0A1U8K8L02e-26A0A1U8K8L0_GOSHI; zinc finger protein 2-like
STRINGLus100069601e-115(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-23zinc finger protein 2