PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006618
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 395aa    MW: 44469.8 Da    PI: 5.6484
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006618genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36471392103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+yei+ed+ +++++sws+ +nsfvv+d++ef+  +LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ i+
   Lus10006618  47 FLSKTYEIVEDSGTDDIVSWSSGNNSFVVWDPQEFSLALLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKLIR 134
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Lus10006618 135 RRKTT 139
                   **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3841130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-3643136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-6143136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3147136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MLNPIGRGGG GGRNRSGSTS SSSTAGGGGA PVPQPVEGLH DVGPPPFLSK TYEIVEDSGT  60
DDIVSWSSGN NSFVVWDPQE FSLALLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE  120
GFLRGQKHLL KLIRRRKTTQ PTTQSTLVDP CVEVGTFGLE GELDRLKRDK QVLMTELVKL  180
RQQQQTTKEC LQMMEQRLRR NEAKQQQMMT FLARAVKNPD FLQQLVHQKG IMRELENAIT  240
KKRRRRPIDQ APIHINNAEA GDDSFVKIEP ADEEEEEFGR VNGHDIAELD SLALDIQAGL  300
GGFSGTRSIE NFEEEGGIEV DHHGRTCKFN DDHEGYLWEH LMDDDEIGKT MGLNMGGGHQ  360
DDRNVDVLLE QLGFFLPPPY PQTKKRPNFY LQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-25171381131Heat shock factor protein 1
5d5v_B1e-25171381131Heat shock factor protein 1
5d5v_D1e-25171381131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0263651e-33BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517070.11e-135PREDICTED: heat stress transcription factor A-6b isoform X2
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9RTK11e-135B9RTK1_RICCO; Heat shock factor protein HSF30, putative
STRINGPOPTR_0010s09210.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-120heat shock transcription factor A6B