PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006547
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 378aa    MW: 42808 Da    PI: 9.4233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006547genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.6e-52141421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                  lppGfrFhPtdeel+ +yL+kk+++ ++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + +   +
  Lus10006547  14 LPPGFRFHPTDEELILHYLQKKLSSIPFPV-SIIADVDIYKFDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLISTFggN 110
                  79****************************.89***************988899**************************************998667 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++++g+kk Lvfykg+ pkg kt+W+mheyrl
  Lus10006547 111 HNNIGIKKALVFYKGKPPKGIKTNWIMHEYRL 142
                  778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-644174IPR003441NAC domain
PROSITE profilePS5100561.63714174IPR003441NAC domain
PfamPF023653.4E-2715142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAMMMKRRSP GSSLPPGFRF HPTDEELILH YLQKKLSSIP FPVSIIADVD IYKFDPWDLP  60
AKATFGEKEW YFFSPRDRKY PNGARPNRAA ASGYWKATGT DKLISTFGGN HNNIGIKKAL  120
VFYKGKPPKG IKTNWIMHEY RLSDPPTKYS IKPTRSKGSS MRLDDWVLCR IYKKTHSNSS  180
HNRPDQTSTT TTVSSSDQDH EKEDQNCHQE QLSSQQTLLS FPSSKSPMIN NQHQVTPLMP  240
QKSSSFSNLL DAMDFLSDPQ FSFNSAGFES FPTDSIAYGD GNYLYHKLPQ LQSNNGSTTM  300
APTHMETTTM HSRPKRERSI GNEDFSSMVN PFKKSMVSSR SHDADQDHMA ADDNGFLNYQ  360
MALNQQLLLS HHLQFQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-771317719171NAC domain-containing protein 19
3swm_B4e-771317719171NAC domain-containing protein 19
3swm_C4e-771317719171NAC domain-containing protein 19
3swm_D4e-771317719171NAC domain-containing protein 19
3swp_A4e-771317719171NAC domain-containing protein 19
3swp_B4e-771317719171NAC domain-containing protein 19
3swp_C4e-771317719171NAC domain-containing protein 19
3swp_D4e-771317719171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006547
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022718970.11e-122NAC transcription factor 47-like
SwissprotQ84TD61e-113NAC47_ARATH; NAC transcription factor 47
TrEMBLB9SHJ81e-119B9SHJ8_RICCO; Transcription factor, putative
STRINGLus100065470.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-103NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]