PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004724
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 297aa    MW: 33498.3 Da    PI: 9.3956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004724genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062831123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 +kC+ C + F+++ +L+ H+++ H
  Lus10004724  8 HKCKLCFRIFPTSRSLTGHMMRsH 31
                 79*******************997 PP

2zf-C2H2171.6e-05189210223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  kC++C+k F+++  L++H r +
  Lus10004724 189 KCEKCTKQFRSSPALTTHRRIC 210
                  8*******************87 PP

3zf-C2H2130.0003230252123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F +   L  H r+H
  Lus10004724 230 FRCPYCYKVFGSGQALGGHKRSH 252
                  89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.99E-8631No hitNo description
PfamPF139120.006832IPR007087Zinc finger, C2H2
SMARTSM003550.04831IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801032IPR007087Zinc finger, C2H2
SuperFamilySSF576677.99E-8183209No hitNo description
PROSITE profilePS501578.933188218IPR007087Zinc finger, C2H2
SMARTSM0035514188208IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-4189209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.53E-5227254No hitNo description
PROSITE profilePS5015710.138230257IPR007087Zinc finger, C2H2
PfamPF139126.2E-13230254IPR007087Zinc finger, C2H2
SMARTSM003550.1230252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEEKKKNHKC KLCFRIFPTS RSLTGHMMRS HHHQLGSGDD SSSYASESYL STEVELEEVA  60
YELRRNPRKS FRVAADPDSA ESETESPQNL NRRRSQRTRK LSEKKRQRGW VSDSPPASSV  120
SDAFPEEEVA MFLVMMSRDV NWRKRSTRFS NDDEDDAIEV REIKIAKKED EEVRERSNSR  180
VRRGINKLKC EKCTKQFRSS PALTTHRRIC SLNTDNGGAN AAAAERRRIF RCPYCYKVFG  240
SGQALGGHKR SHLSSTTGSY PSPVAQPPVK SSGGLLDLNF PPAATEDDDY SVVSDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690429.11e-59zinc finger protein ZAT4-like
STRINGLus100047240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-20C2H2-like zinc finger protein